PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11233_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 375aa    MW: 40683.7 Da    PI: 7.4977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11233_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-0796120126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f+  GtC+y  +C+FaH+
  Neem_11233_f_1  96 FKTKLCCKFRN-GTCPYITNCNFAHS 120
                     69*********.*************8 PP

2zf-CCCH18.53.6e-06171196126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  Neem_11233_f_1 171 YKGRHCKKFYTEEGCPYGDNCTFLHD 196
                     77888********************7 PP

3zf-CCCH41.71.9e-13255280126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Neem_11233_f_1 255 WKTRICNKWELTGYCPFGNKCHFAHG 280
                     8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.16E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.002195121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.14195122IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-9169198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7169198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23170198IPR000571Zinc finger, CCCH-type
SMARTSM003560.058170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-17249284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10251285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441254282IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9254281IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSYARDSSEN VVHVIVGNGP PENWLPNSND SSVWATEDEY RVWNNNHDNS ADTPSNSNSN  60
YQSQTRSNSE QPPNKKSRNS SQDVNSKSKA IGKMFFKTKL CCKFRNGTCP YITNCNFAHS  120
IEELRRPPPN WQEIVAAHEE DRAVPNEAPR EEFQIPSLGS TNFGVESQRS YKGRHCKKFY  180
TEEGCPYGDN CTFLHDEQSK NRESVAISLG PGGYGGSGGG GGGGVAGAGA GAGAAAVGAC  240
GGNNSGASNV KPSNWKTRIC NKWELTGYCP FGNKCHFAHG AQELHRYGGG LVESENKDSS  300
TAPSDLKLVG VPLKTPVDTV VASVTSVPHA DAYHMGVPSQ RTSIVIQRPG QRSHQKWKGP  360
DKISRIYGDW IDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445697.10.0hypothetical protein CICLE_v10015789mg
RefseqXP_006485547.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-138C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLV4TZ870.0V4TZ87_9R
STRINGPOPTR_0003s09240.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-138C3H family protein